Publications
2009
2008
- Complex Networks
Modelling: A New Approach to Neurosciences
Y. Moreno
Chapter contribution in "Coordinated Activity in the Brain:
measurements and relevance to brain function and behavior Springer Verlag, submitted
(2008)
- Rumor-like
information dissemination in complex computer networks
M. Nekovee and Y.
Moreno
Chapter contribution in "Unifying Themes
in Complex Systems", vol. 5, Springer
Complexity Series, in press (2008)
- Dynamics of
gossip-like information dissemination in complex computer
networks
M. Nekovee
and Y. Moreno
International Journal of Computer
Mathematics 85, 1165
(2008)
- Structural and
dynamical properties of cellular regulatory networks
R. Sinatra, J. G.
Gardenes, Y. Moreno, L. M. Floría, D. Condorelli and V.
Latora
Statistical mechanics of cellular systems
and processes. Edited by M. H. Zaman, Cambridge University Press , (2008)
-
Synchronization of Kuramoto
oscillators in Random Geometric Graphs
A. Díaz-Guilera, J. G.
Gardenes, Y. Moreno and M. Nekovee
International
Journal of Bifurcation and Chaos in
press(2008) (arXiv:physics/0801.3044)
- Thermal
depinning of fluxons in discrete Josephson rings
J.J. Mazo, F. Naranjo, K. Segall
Physical
Review B
78, 114510 (2008)
- Disorder
Induced control of Discrete Soliton Ratchets
P. J. Martínez, R. Chacón
Physical Review Letters
100, 144101 (2008)
- Scaling breakdown in flow
fluctuations on complex networks
S. Meloni, J. G. Gardenes, V.
Latora and Y. Moreno
Physical Review Letters
100, 208701 (2008)
- Natural Selection of cooperation
and degree hierarchy in heterogeneous populations
J. G. Gardenes,
J. Poncela, L. M. Floría and Y. Moreno
Journal
of Theoretical Biology 253, 296
(2008)
- Complex cooperative networks from
evolutionary preferential attachments
J. Poncela, J. G. Gardenes,
L. M. Floría, A. Sánchez and Y. Moreno
PLoS ONE
3, e2449 (2008). Open
Access
- Spreading of sexually transmitted
diseases in heterosexual populations
J. G. Gardenes, V. Latora,
Y. Moreno, and E. Profumo
Proceedings of the
National Academy of Sciences USA 105, 1399 (2008)
- Subgap biasing of
superconducting tunnel junctions without a magnetic field
K.
Segall, J. Moyer and J. J. Mazo
J. Appl. Phys.
104, 043920, 6pp. (2008)
- A model for hand-over-hand motion
of molecular motors
J. Munárriz, J. J. Mazo and F.
Falo
Physical Review E 77, 031915, 7pp. (2008)
2007
- Controlling
Chaotic Solitons in Frenkel-Kontorova Chains by Disordered Driving
Forces
R. Chacón,
P. J. Martínez
Physical Review Letters
98, 224102 (2007)
- Synchronizability determined by
coupling strengths and topology on Complex Networks
J. G.
Gardenes, Y. Moreno, A. Arenas
Physical Review E
75, 066106 (2007)
- Robustness of Cooperation in the
Evolutionary Prisoner's Dilemma on Complex Networks
J. Poncela,
J. G. Gardenes, L. M. Floría, and Y. Moreno
New
Journal of Physics 9, 184
(2007)
- The Energence of Collective Behavior
in Complex Topologies
Y. Moreno
Proceedings of the Conference NET-WORKS'07, 97 (2007)
- Synchronization of networks with
variable local properties
J. G. Gardenes, and Y.
Moreno
International Journal of Bifurcation and
Chaos 17, 2501 (2007)
- The Modeling
of Biological Networks
L. M. Floría, Y. Moreno, and J. G.
Gardenes
Physics of Complex Systems and Life
Sciences, Book Chapter, Edited by M. A. F. Sanjuan (research Signpost)
(2007)
- Dynamical Organization of Cooperation
in Complex Topologies
J. G. Gardenes, M. Campillo, L. M. Floria
and Y. Moreno
Physical Review Letters 98, 108103 (2007)
- Paths to Synchronization on Complex
Networks
J. G. Gardenes, Y. Moreno, and A. Arenas
Physical Review Letters 98, 034101 (2007)
- Theory of rumor spreading in complex
social networks
M. Nekovee, Y. Moreno, G. Bianconi, and M.
Marsili
Physica A 374, 457 (2007)
- Awaking and Sleeping a Complex
Network
R. López-Ruiz, Y. Moreno, S. Boccaletti, D.-U. Hwang and
A.F. Pacheco
Neural Networks 20, 102 (2007)
- Computational diagnosis of protein
conformational diseases: Short MD simulations reveal a fast unfolding of
r-LDL mutants that cause Familiar Hypercholesterolemia
S.
Cuesta-López, F. Falo and J. Sancho
Proteins:
Structure, Function, and Bioinformatics 66, pp. 87-95 (2007)
- Common conformational changes in
flavodoxins induced by FMN and anion binding: The structure of
Helicobacter pylori apoflavodoxin
M. Martínez-Júlvez, N.
Cremades, M. Bueno, I. Pérez-Dorado, C. Maya, S. Cuesta-López, D. Prada,
F. Falo, J. A. Hermoso and Javier Sancho
Proteins: Structure, Function, and Bioinformatics 66, pp. 581-594 (2007)
2006
- From Physics
to Biology: the interface between experiment and computation
J. Clemente, Y. Moreno, J.F. Saenz
and A. Velazquez
AIP Conference Proceedings
851, 1 (2006). Editorial paper
Introducing the AIP Volume
- Analysis of
Apoflavodoxin Folding Behavior with Elastic Network Models
M. Cotallo-Abán, D. Prada-García, J.J.
Mazo, P. Bruscolini, F. Falo and J. Sancho
AIP
Conference Proceedings 851, pp.
135-149 (2006).
- Current Trends
in the modeling of Biological Networks
Y. Moreno, L. M. Floria and J. G. Gardenes
AIP Conference Proceedings 851, 150 (2006).
- Role of additive Gaussian noise in suppressing
chaos by weak harmonic excitations
R. Chacón, P. J. Martínez
Fluctuations and
Noise Letters
6, 3 L279-L286 (2006)
- Complex Networks: Structure and
Dynamics
S. Boccaletti, V. Latora, Y. Moreno, M. Chavez and D.
-U. Hwang
Physics Reports 424, pp. 175-308 (2006). This is an
over 130 pages review article on Complex Networks and their
aplications
- Structure of peer-to-peer
social networks
F. Wang, Y. Moreno, and Y.Sun
Phys. Rev. E 73, 036123
(2006).
- From scale-free to
Erdos-Rényi networks
J. Gómez-Gardeñes and Y.
Moreno
Phys. Rev. E 73, 056124, 7 pp. (2006)
- Scale-free topologies and
activatory-inhibitory interactions
J. Gómez-Gardeñes, Y. Moreno
and L.M. Floría
Chaos 116,
015114, 11 pp. (2005)
- Discrete breathers in
two-dimensional anisotropic nonlinear Schrödinger lattices
J.
Gómez-Gardeñes, L.M. Floría and A.R. Bishop
Physica D 216, 31-43 (2006)
- Solitons in the Salerno
model with competing nonlinearities
J. Gómez-Gardeñes,
B.A. Malomed, L.M. Floría and A.R.
Bishop
Phys. Rev. E 73, 036608, 8 pp. (2006)
- Inmunization of real complex
communication networks
J. Gómez-Gardeñes, P. Echenique and Y.
Moreno
Eur. Phys. J. B 49, 259-264 (2006)
2005
- Can One Predict DNA
Transcription Start Sites by Studying Bubbles?
Titus S. van Erp,
Santiago Cuesta-Lopez, Johannes-Geert Hagmann, and Michel
Peyrard
Phys. Rev. Lett. 95, 218104 (2005) [4 pages].
- Nonlinear response of
single-molecule nanomagnets: Equilibrium and dynamical
R.
López-Ruiz, F. Luis, V. González, A. Millán, and J. L. García-Palacios
Phys. Rev. B 72, 224433 (2005) [13
pages].
- Spin Dynamics in a Dissipative
Environment: From Quantal to Classical
J. L. García-Palacios and S.
Dattagupta
Phys. Rev. Lett. 95, 190401 (2005) [4 pages].
- Quantum ratchets at high
temperatures
D. Zueco and J. L.
García-Palacios
Physica E 29, 435-441 (2005).
- Can we model DNA at the
mesoscale?
S. Cuesta-López, J. Errami, F. Falo and M.
Peyrard
Journal of Biological Physics 31, 273-301 (2005).
- Dynamics of jamming transitions
in complex networks.
P. Echenique, J. Gómez-Gardeñes and Y.
Moreno
Europhysics Letters 71, 325-331 (2005).
- Numerical simulation of
multi-junction bias circuits for superconducting detectors.
K.
Segall, J. J. Mazo and T. P. Orlando
IEEE TRans. Appl. Super.
15, 583-586 (2005).
- Michaelis-Menten dynamics in
complex heterogeneous networks.
J. Gómez-Gardeñes, Y. Moreno and
L. M. Floría
Physica A 352, 265-281 (2005).
- On the robustness of complex
heterogeneous gene expression networks.
J. Gómez-Gardeñes, Y.
Moreno and L. M. Floría
Biphysical Chemistry 115, 225-228
(2005).
- Distance-d covering problems in
scale-free networks with degree correlations.
P. Echenique, J.
Gómez-Gardeñes, Y. Moreno and A. Vázquez
Physical Review E 71,
035102(R) (2005) [4
pages].
- A double-deletion method to
quantifying incremental binding energies in proteins from experiment.
Example of a destabilizing hydrogen bonding pair.
Luis A. Campos,
Santiago Cuesta-López, Jon López-Llano, Fernando Falo, Javier
Sancho.
Biophysical Journal 88, 1311-1321 (2005). Preprint: q-bio.BM/0412017.
- Mode-locking of discrete
breathers.
D. Zueco, P. J. Martínez, L. M. Floría and F.
Falo.
Phys. Rev. E 71, 036613 (2005) [8 pages]. Preprint: nlin.ps/0410018.
- Multiple junction biasing of
superconducting tunnel junction detectors.
K. Segall, J. J. Mazo
and T. P. Orlando.
Appl. Phys. Lett. 86, 153507 (2005) [3 pages]. A
bit longer preprint version: cond-mat/0410072.
2004
- Improved routing strategies for
Internet traffic delivery.
P. Echenique, J. Gómez-Gardeñes, Y.
Moreno.
Phys. Rev. E 70, 056105 (2004)
- Mobile localization in nonlinear
Schrödinger lattices
J. Gómez-Gardeñes, F. Falo and L.M.
Floría.
Physics Letters A 332, 213.219 (2004)
- Non-integrable Schrödinger
Discrete Breathers.
J. Gómez-Gardeñes, L.M. Floría, M. Peyrard,
A.R. Bishop.
Chaos 14, 1130 (2004).
- Taming chaotic solutions in
Frenkel-Kontorova chains by weak periodic excitations.
P. J.
Martínez and R. Chacón.
Phys. Rev. Lett. 93, 237006 (2004)
- Caldeira-Legget quantum master
equation in Wigner phase space: continued fraction solution and
application to Brownian motion in periodic potentials
J. L.
García-Palacios, D. Zueco.
J. Phys. A: Math. Gen. 37, 10735-10770 (2004). Also in
'cond-mat/0407454'
- Nonlinear response of
superparamagnets with finite damping: an analytical approach.
J.
L. García-Palacios y D. A. Garanin.
Phys. Rev. B 70, 064415,
7pp (2004)
- Relaxation in interacting
nanoparticle systems.
P. E. Jönsson, J. L. García-Palacios, M. F.
Hansen, y P. Nordblad.
J. Mol. Liq. 114, 131-135 (2004).
- Solving quantum master equations in
phase space by continued-fraction methods.
J. L.
García-Palacios
Europhys. Lett. 65(6), 735-741 (2004)
- Large quantum nonlinear dynamic
susceptibility of single-molecule magnets.
F. Luis, V. González,
A. Millán y J. L. García-Palacios.
Phys. Rev. Lett. 92(10),
107201 (2004)
- Local
versus global knowledge in the Barabási-Albert scale-free network
model
J. Gómez-Gardeñes, Y. Moreno
Phys. Rev. E 69,
037103, 4pp (2004)
- Bound states of breathers in the
Frenkel-Kontorova model.
M. Meister and L.M. Floría.
Eur.
Phys. J. B 37, 213-221 (2004)
- Directed transport of modulated
structures in the Frenkel-Kontorova model with a pulsating
coupling.
L. M. Floría, P. J. Martínez, S. Flach and M. V.
Fistul.
Physica D 187, 100-107 (2004)
- Localized excitations in
Josephson arrays. Part I: Theory and modeling
Juan J.
Mazo
in Energy Localisation and Transfer, Advanced Series in
Nonlinear Dynamics, vol22. Pp. 193-245, World Scientific (2004).
2003
2002
- Discrete breathers in two-dimensional
Josephson-junction arrays.
J. J. Mazo
Phys. Rev. Lett.
89, 234101 (2002)
- Transport of modulated phases by
pumping
L. M. Floría, F. Falo, P. J. Martínez and J. J.
Mazo
Europhys. Lett. 60, 174-180 (2002)
- Fluxon
ratchet potentials in superconducting circuits.
F. Falo, P.J.
Martínez, J.J. Mazo, T.P. Orlando, K. Segall and E. Trías
Appl. Phys.
A 75, 263-269 (2002)
- Interactions between Josephson
vortices and breathers.
E. Trías, J.J. Mazo and T.P.
Orlando
Phys. Rev. B 65, 054517 (2002) 2001
- Discrete breathers in dissipative
lattices.
J.L. Marín, F. Falo, P.J. Martínez and L.M.
Floría
Phys. Rev. E 63, 066603 (2001)
- Mirror symmetry breaking through an
internal degree of freedom leading to directional motion.
S.
Cilla, F. Falo and L.M. Floría
Phys. Rev. E 63, 031110 (2001)
- Discrete breathers in Josephson
ladders.
E. Trías, J.J. Mazo, A. Brinkman and T.P.
Orlando.
Physica D 156, 98-138 (2001)
- Derivation
of the basic system of kinetic equations governing superparamagnetic
relaxation by the use of the adjoint Fokker-Planck operator
J. L.
García-Palacios and P. Svedlindh.
Phys. Rev. B 63, 172417
(2001) (4 pp.)
- Relaxation time of weakly
interacting superparamagnets
P. E. Jönsson and J. L.
García-Palacios
Europhys. Lett. 55, 418-424 (2001)
- Thermodynamic perturbation theory
for dipolar superparamagnets
P. E. Jönsson and J. L.
García-Palacios
Phys. Rev. B 64, 174416 (2001) (11 pp.)
2000
- Superconducting ladders
take breather.
L. M. Floría
Phys. World 13, no. 4 , 23
(2000).
- Depinning of kinks in a
Josephson-junction ratchet array.
E. Trías, J.J. Mazo, F. Falo
and T.P. Orlando
Phys. Rev. E 61, 2257-2266 (2000)
- Discrete breathers in nonlinear
lattices: Experimental detection in a Josephson-junction
array.
E. Trías, J.J. Mazo and T.P. Orlando
Phys. Rev. Lett.
84, 741-744 (2000)
- Decoherence of the superconducting
persistent current qubit.
L. Tian, L.S. Levitov, C.H. van der
Wal, J.E. Mooij, T.P. Orlando, S. Lloyd, C.J.P. Harmans and J.J.
Mazo
Quantum Mesoscopic Phenomena and Mesoscopic Devices in
Microelectronics. Chapter 28, pp 429-438. Kluwer Acad. Pub. (2000).
- On the
statics and dynamics of magneto-anisotropic nanoparticles
(review)
J. L. García-Palacios.
Adv. Chem. Phys. 112, 1-210
(2000)
- Nonlinear susceptibility of
superparamagnets with a general anisotropy energy
J. L.
García-Palacios, P. Jönsson, and P. Svedlindh.
Phys. Rev. B
61, 6726-6733 (2000)
- Large
nonlinear dynamical response of superparamagnets: Interplay
between precession and thermoactivation in the stochastic
Landau-Lifshitz equation
J. L. García-Palacios and P.
Svedlindh.
Phys. Rev. Lett. 85, 3724-3727 (2000)
- Nonlinear dynamic susceptibilities
of interacting and noninteracting magnetic nanoparticles
P.
Jönsson, T. Jonsson, J. L. García-Palacios, and P. Svedlindh.
J.
Magn. Magn. Mater. 222, 219--> 1999
- Superconducting persistent current
qubit.
T.P. Orlando, J.E. Mooij, Lin Tian, Caspar H. van der Wal,
L. Levitov, Seth Lloyd and J.J. Mazo
Phys. Rev. B 60,
15398-15413 (1999)
- Discrete breathers in dc-biased
Josephson-junction arrays.
J.J. Mazo, E. Trías and T.P.
Orlando
Phys. Rev. B 59, 13604-13607 (1999)
- Ratchet potential for fluxons in
Josephson-junction arrays.
F. Falo, P. J. Martínez, J.J. Mazo and
S. Cilla
Europhysics Letters45, 700-706 (1999)
- Intrinsically localized chaos in
discrete nonlinear extended systems.
P.J. Martínez, L.M. Floría,
F. Falo and J.J. Mazo
Europhysics Letters 45,444-449 (1999).
- Brownian
rotation of classical spins: dynamical equations for non-bilinear
spin-environment couplings
J. L. García-Palacios.
Eur. Phys.
J. B 11 293-308 (1999) 1998
- A two dimensional model for kinesin and dynein stepping along
microtubules.
S. Cilla, L. M. Floria.
Nuovo Cimento D
20, 1761 (1998).
- Floquet stability of discrete
breathers in anisotropic Josephson junction ladders
P.J.
Martínez, L.M. Floría, J.L. Marín, S. Aubry, J.J. Mazo
Physica D
119, 175-183 (1998)
- Finite size effects on
instabilities of discrete breathers.
J.L. Marín, S.
Aubry,
Physica D 119, 166-174 (1998)
- Josephson-junction ladder: A
benchmark for nonlinear concepts.
L.M. Floría, J.L. Marín, S.
Aubry, P.J. Martínez, F. Falo and J.J. Mazo
Physica D 113,
387-396 (1998)
- Intrinsic localised modes.
Existence and linear stability.
J.L. Marín, S. Aubry , L.M.
Floría,.
Physica D 113, 283-292 (1998).
- Internal degrees of freedom in a
thermodynamical model for intracel biological transport.
S.
Cilla, L. M. Floria.
Physica D 113, 167-161(1998)
- Langevin-dynamics study of the dynamical
properties of small magnetic particles
J. L. García-Palacios and
F. J. Lázaro.
Phys. Rev. B 58, 14937-14958 (1998)
- Localised moving breathers in 2d hexagonal lattice
J. L. Marín,
J. C. Eilbeck and F. M. Rusell.
Physics Letters A248, 225-229
(1998). 1997
1996
- Iron Clusters Supported in a Zeolite
Matrix: Comparison of Different Magnetic Characterizations
F. J.
Lázaro, J. L. García-Palacios, V. Schünemann, Ch. Butzlaff,A. Larrea,
and M. A. Zaluska-Kotur.
Phys. Rev. B 53, 13934-13941 (1996)
- Breathers in nonlinear lattices: numerical calculation at the
anti-continuous limit.
J.L. Marín, S. Aubry .
Nonlinearity
9, 1501-1528 (1996).
- Dissipative dynamics of the
Frenkel-Kontorova model.
L.M. Floría and J.J. Mazo
Advances in
Physics 45, 505-598 (1996)
- Intrinsic localisation in the
dynamics of a Josephson-junction ladder
L.M. Floría, J.L. Marín,
P.J. Martínez, F. Falo and S. Aubry
Europhysics Letters 36 (7),
539-544 (1996)
- Equilibrium properties of a
Josephson-junction ladder with screening effects.
J.J. Mazo and
J.C. Ciria
Phys. Rev. B 54, 16068-16076 (1996) 1995 and
beyond
- Josephson junction ladders: ground
state and relaxation phenomena.
J.J. Mazo, F. Falo and L.M.
Floría
Phys. Rev. B 52, 10433-10440 (1995)
- Stability of metastable structures
in the dissipative ac dynamics of the Frenkel-Kontorova
model.
J.J. Mazo, F. Falo and L.M. Floría
Phys. Rev. B
52, 6451-6457 (1995)
- Effective potentials methods for magnetic models with
next-nearest-neighbor interactions
José L. Marín, Pedro J.
Martínez
Journal of Magnetism and Magnetic Materials 140-144,
1625-1626 (1995)
- Possible
soliton motion in ac-driven damped nonlinear lattices.
D. Cai, A.
Sanchez, A. R. Bishop, F. Falo, L.M. Floria.
Phys. Rev. B 50,
9652-9655 (1994). Rapid Communication.
- Study of the diffusion in disordered ionic conductors by Langevin
molecular dynamics.
J.A. Puertolas, F Falo.
Journal of
non-crystalline solids, 172-174 , 1202-1206 (1994).
- Microstructure, interfaces and magnetic behavior of thick Ag/BSCCO
composite fibres
A. Larrea, E. Snoeck, A. Badía, G.F. de la Fuente
and R. Navarro
Physica C 220, 21 (1994)
- Unlocking mechanism in the ac dynamics
of the Frenkel-Kontorova model.
F. Falo, L.M. Floría, P.J.
Martínez and J.J. Mazo
Phys. Rev. B 48, 7434-7437 (1993)
- Flux-lattice noise and symmetry
breaking in frustrated Josephson-junction arrays.
N.
Gronbech-Jensen, A. R. Bishop, F. Falo, P.S Lomdahl.
Phys. Rev. B
46, 11149-11152 (1992).
- Langevin Dynamics Simulations
of Relaxation in large Frustrated Josephson juntion arrays
N.
Gronbech-Jensen, A. R. Bishop, F. Falo, P.S Lomdahl.
Phys. Rev. B
45, 10139-10142 (1992). Rapid Communication.
- Shapiro steps in the steady-state
dynamics of incommesurate structures.
L. M. Floria, F.
Falo.
Phys. Rev. Lett. 68, 2713-2717 (1992).
- Ground state of a lattice in an inconmensurate potential
P.J.
Martínez Ovejas, L.M. Floría, F. Falo
Ferroelectrics 125,
239-244 (1992)
- Exact Solution of the one dimensional J2 model of superconducting
networks in a magnetic field.
R. B. Griffiths, L. M. Floria.
Phys.
Rev. B 45, 9887-9893 (1992).
- Anisotropic long-range Ising model in a magnetic field
L. M.
Floria, S. Aubry, P. Quemerais.
Journal of Magnetism and Magnetic
Materials 104-107, 199-200 (1992).
- Phase Diagram of a three -dimensional anisotropic long-range Ising
model versus temperatue and magnetic field.
L. M. Floria, P.
Quemerais, S. Aubry.
Journal of Physics : Condensed Matter 4,
5921-5946 (1992).
- Langevin molecular dynamics of
interfaces: Nucleation versus spiral growth.
F. Falo, A. R.
Bishop, P.S. Lomdahl, B Horovitz.
Phys. Rev. B 43, 8081-8088
(1991).
- IV
Characteristics in 2-D frustrated Josephson junction arrays.
F.
Falo, A. R. Bishop, P.S. Lomdahl.
Phys. Rev. B 41,10983-10993
(1990).
- Large scale flow in competing interaction system.
A. R. Bishop,
S. Marianer, L. M. Floria.
Phys. Rev. B 41,
6703-6707 (1990).
- Symmetry-breaking commensurate states in generalized
Frenkel-Kontorova Models.
K. Sasaki, L. M. Floria
Journal of
Physics : Condensed Matter 1, 2179-2198 (1989).
- Numerical Procedure for solving a Minimization Eigenvalue
Problem.
L. M. Floria, R. B. Griffiths.
Numesrische Mathematik
55, 565-574 (1989)
- Application of the method of effective potential to a model for
twinning in elastic materials.
S. Marianer, L. M.
Floria.
Phys. Rev. B 38, 12054-12057 (1988).
Chain-Gang, October
2008
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